Lab Publications
Links are provided for everything. Some of these are in the public domain, others are not. If you encounter a paywall, please email me and I will be happy to send you the paper quickly.
We are also pretty active on GitHub. If you are looking for a code or data project, please check there, or try the lab's GitHub Organization.
For data we've published, please check USGS ScienceBase.
We are also pretty active on GitHub. If you are looking for a code or data project, please check there, or try the lab's GitHub Organization.
For data we've published, please check USGS ScienceBase.
2023
Metcalfe, A.N., Fritzinger, C.A., Weller, T.J., Dodrill, M.J., Muehlbauer, J.D., Yackulic, C.B., Holton, B.P., Szydlo, C.M., Durning, L.E., Sankey, J.B. & Kennedy, T.A. (2023) Insectivorous bat foraging tracks the availability of aquatic flies (Diptera). The Journal of Wildlife Management 87: e22414. DOI: 10.1002/jwmg.22414
Metcalfe, A.N., Muehlbauer, J.D., Ford, M.A. & Kennedy, T.A. (2023) Colorado River Basin. In: Rivers of North America (Eds M.D. Delong, T.D. Jardine, A.C. Benke & C.E. Cushing), 2nd edition, pp 462–509. Academic Press, San Diego, CA. DOI: 10.1016/B978-0-12-818847-7.00001-X
Abernethy, E.F., Muehlbauer, J.D., Kennedy, T.A., Dziedzic, K.E., Elder, H., Burke, M.K. & Lytle, D.A. (2023) Population connectivity of aquatic insects in a dam-regulated, desert river. River Research and Applications 364–374. DOI: 10.1002/rra.3972
Metcalfe, A.N., Muehlbauer, J.D., Ford, M.A. & Kennedy, T.A. (2023) Colorado River Basin. In: Rivers of North America (Eds M.D. Delong, T.D. Jardine, A.C. Benke & C.E. Cushing), 2nd edition, pp 462–509. Academic Press, San Diego, CA. DOI: 10.1016/B978-0-12-818847-7.00001-X
Abernethy, E.F., Muehlbauer, J.D., Kennedy, T.A., Dziedzic, K.E., Elder, H., Burke, M.K. & Lytle, D.A. (2023) Population connectivity of aquatic insects in a dam-regulated, desert river. River Research and Applications 364–374. DOI: 10.1002/rra.3972
2022
Deemer, B.R., Yackulic, C.B., Hall, R.O., Dodrill, M.J., Kennedy, T.A., Muehlbauer, J.D., Topping, D.J., Voichick, N. & Yard, M.D. (2022) Experimental reductions in sub-daily flow fluctuations increased gross primary productivity for 425 river kilometers downstream. Proceedings of the National Academy of Sciences Nexus 1: pgac094. DOI: 10.1093/pnasnexus/pgac094
Metcalfe, A.N., Kennedy, T.A., Mendez, G.A. & Muehlbauer, J.D. (2022) Applied citizen science in freshwater research. Wiley Interdisciplinary Reviews: Water 9: e1578. DOI: 10.1002/wat2.1578
Metcalfe, A.N., Kennedy, T.A., Mendez, G.A. & Muehlbauer, J.D. (2022) Applied citizen science in freshwater research. Wiley Interdisciplinary Reviews: Water 9: e1578. DOI: 10.1002/wat2.1578
2021
Abernethy, E.F., Muehlbauer, J.D., Kennedy, T.A., Tonkin, J.D., Van Driesche, R. & Lytle, D.A. (2021) Hydropeaking intensity and dam proximity limit aquatic invertebrate diversity in the Colorado River Basin. Ecosphere 12: e03559. DOI: 10.1002/ecs2.3559
Metcalfe, A.N., Muehlbauer, J.D., Kennedy, T.A., Yackulic, C.B., Dibble, K.L. & Marks, J.C. (2021) Net-spinning caddisfly distribution in large regulated rivers. Freshwater Biology 66:89–101. DOI: 10.1111/fwb.13617
Metcalfe, A.N., Muehlbauer, J.D., Kennedy, T.A., Yackulic, C.B., Dibble, K.L. & Marks, J.C. (2021) Net-spinning caddisfly distribution in large regulated rivers. Freshwater Biology 66:89–101. DOI: 10.1111/fwb.13617
2020 |
Muehlbauer, J.D., Larsen, S., Jonsson, M. & Emilson, E.J.S. (2020) Variables affecting resource subsidies from streams and rivers to land and their susceptibility to global change stressors. In: Contaminants and Ecological Subsidies: The Land-Water Interface (Eds J.M. Kraus, D.M. Walters & M.A. Mills), pp 129–155. Springer, Cham, Switzerland. DOI: 10.1007/978-3-030-49480-3_7
Metcalfe, A.N., Kennedy, T.A., Marks, J.C., Smith, A.D. & Muehlbauer, J.D. (2020) Spatial population structure of a widespread aquatic insect in the Colorado River Basin: evidence for a Hydropsyche oslari species complex. Freshwater Science 39:309–320. DOI: 10.1086/709022
Metcalfe, A.N., Kennedy, T.A., Marks, J.C., Smith, A.D. & Muehlbauer, J.D. (2020) Spatial population structure of a widespread aquatic insect in the Colorado River Basin: evidence for a Hydropsyche oslari species complex. Freshwater Science 39:309–320. DOI: 10.1086/709022
2019
Muehlbauer, J.D., Lupoli, C.A. & Kraus, J.M. (2019) Aquatic–terrestrial linkages provide novel opportunities for freshwater ecologists to engage stakeholders and inform riparian management. Freshwater Science 38:946–952. DOI: 10.1086/706104
2017
Muehlbauer, J.D., Kennedy, T.A., Copp, A.J. & Sabol, T.A. (2017) Deleterious effects of net clogging on the quantification of stream drift. Canadian Journal of Fisheries and Aquatic Sciences 74:1041–1048. DOI: 10.1139/cjfas-2016-0365
Baxter, C.V., Kennedy, T.A., Miller, S.W., Muehlbauer, J.D. & Smock, L.A. (2017) Macroinvertebrate drift, adult insect emergence and oviposition. In: Methods in Steam Ecology (Eds F.R. Hauer & G.A. Lamberti), 3rd edition, Vol. 1, Ecosystem Structure, pp 435–456. Academic Press, Boston, MA. DOI: 10.1016/B978-0-12-416558-8.00021-4
Dzul, M.C., Yackulic, C.B., Korman, J., Yard, M.D. & Muehlbauer, J.D. (2017) Incorporating temporal heterogeneity in environmental conditions into a somatic growth model. Canadian Journal of Fisheries and Aquatic Sciences 74: 316–326. DOI: 10.1139/cjfas-2016-0056
Baxter, C.V., Kennedy, T.A., Miller, S.W., Muehlbauer, J.D. & Smock, L.A. (2017) Macroinvertebrate drift, adult insect emergence and oviposition. In: Methods in Steam Ecology (Eds F.R. Hauer & G.A. Lamberti), 3rd edition, Vol. 1, Ecosystem Structure, pp 435–456. Academic Press, Boston, MA. DOI: 10.1016/B978-0-12-416558-8.00021-4
Dzul, M.C., Yackulic, C.B., Korman, J., Yard, M.D. & Muehlbauer, J.D. (2017) Incorporating temporal heterogeneity in environmental conditions into a somatic growth model. Canadian Journal of Fisheries and Aquatic Sciences 74: 316–326. DOI: 10.1139/cjfas-2016-0056
2016
Metcalfe, A.N., Kennedy, T.A. & Muehlbauer, J.D. (2016) Phenology of the adult angel lichen moth (Cisthene angelus) in Grand Canyon, USA. The Southwestern Naturalist 61: 233–240. DOI: 10.1894/0038-4909-61.3.233
Smith, J.T., Muehlbauer, J.D. & Kennedy, T.A. (2016) Evaluating potential sources of variation in Chironomidae catch rates on sticky traps. Marine and Freshwater Research. 67: 1987–1990. DOI: 10.1071/MF15189
Kennedy, T.A., Muehlbauer, J.D., Yackulic, C.B., Lytle, D.A., Miller, S.W., Dibble, K.L., Kortenhoeven, E.W., Metcalfe, A.N. & Baxter, C.V. (2016) Flow management for hydropower extirpates aquatic insects, undermining river food webs. BioScience 77: 561–575. DOI: 10.1093/biosci/biw059
Larsen, S., Muehlbauer, J.D. & Martí, E. (2016) Resource subsidies between stream and terrestrial ecosystems under global change. Global Change Biology 22: 2489–2504. DOI: 10.1111/gcb.13182
Smith, J.T., Muehlbauer, J.D. & Kennedy, T.A. (2016) Evaluating potential sources of variation in Chironomidae catch rates on sticky traps. Marine and Freshwater Research. 67: 1987–1990. DOI: 10.1071/MF15189
Kennedy, T.A., Muehlbauer, J.D., Yackulic, C.B., Lytle, D.A., Miller, S.W., Dibble, K.L., Kortenhoeven, E.W., Metcalfe, A.N. & Baxter, C.V. (2016) Flow management for hydropower extirpates aquatic insects, undermining river food webs. BioScience 77: 561–575. DOI: 10.1093/biosci/biw059
Larsen, S., Muehlbauer, J.D. & Martí, E. (2016) Resource subsidies between stream and terrestrial ecosystems under global change. Global Change Biology 22: 2489–2504. DOI: 10.1111/gcb.13182
2015
Clay, P.A., Muehlbauer, J.D. & Doyle, M.W. (2015) Effect of tributary and braided confluences on aquatic macroinvertebrate communities and geomorphology in an alpine river watershed. Freshwater Science 34: 845–856. DOI: 10.1086/682329
2014
Smith, J.T., Kennedy, T.A. & Muehlbauer, J.D. (2014) Building a better sticky trap: description of an easy to use trap and pole mount for quantifying the abundance of adult aquatic insects. Freshwater Science 33: 972–977. DOI: 10.1086/676998
Copp, A., Kennedy, T.A. & Muehlbauer, J.D. (2014) Barcodes are a useful tool for labeling and tracking ecological samples. Bulletin of the Ecological Society of America 95: 293–300. DOI: 10.1890/0012-9623-95.3.293
Muehlbauer, J.D., Collins, S.F., Doyle, M.W. & Tockner, K. (2014) How wide is a stream? The spatial extent of the potential “stream signature” in terrestrial food webs using meta-analysis. Ecology 95: 44–55. DOI: 10.1890/12-1628.1
Wang, H., Zhang, Z., Muehlbauer, J.D., He, Q. & Jiang, D. (2014) Linking stoichiometric homeostasis of microorganisms with soil phosphorous dynamics in wetlands subjected to microcosm warming. PLoS ONE 9: e85575. DOI: 10.1371/journal.pone.0085575
Copp, A., Kennedy, T.A. & Muehlbauer, J.D. (2014) Barcodes are a useful tool for labeling and tracking ecological samples. Bulletin of the Ecological Society of America 95: 293–300. DOI: 10.1890/0012-9623-95.3.293
Muehlbauer, J.D., Collins, S.F., Doyle, M.W. & Tockner, K. (2014) How wide is a stream? The spatial extent of the potential “stream signature” in terrestrial food webs using meta-analysis. Ecology 95: 44–55. DOI: 10.1890/12-1628.1
Wang, H., Zhang, Z., Muehlbauer, J.D., He, Q. & Jiang, D. (2014) Linking stoichiometric homeostasis of microorganisms with soil phosphorous dynamics in wetlands subjected to microcosm warming. PLoS ONE 9: e85575. DOI: 10.1371/journal.pone.0085575
2013
Riggsbee, J.A., Doyle, M.W., Julian, J.P., Manners, R., Muehlbauer, J.D., Sholtes, J. & Small, M.J. (2013) Influence of aquatic and semi-aquatic organisms on channel forms and processes. In: Treatise on Geomorphology (Ed J.F. Schroder), Vol. 9, Fluvial Geomorphology (Ed E. Wohl), pp 189–202. Academic Press, San Diego, CA. DOI: 10.1016/B978-0-12-374739-6.00237-2
2012
Muehlbauer, J.D. & Doyle, M.W. (2012) Knickpoint effects on macroinvertebrates, sediment, and discharge in urban and forested streams: Urbanization outweighs micro-scale heterogeneity. Freshwater Science 31: 282–295. DOI: 10.1899/11-010.1
Muehlbauer, J.D., Duncan, J. M. & Doyle, M.W. (2012) Benign use of salt slugs on aquatic macroinvertebrates: Measuring discharge with salt during an aquatic ecology study. River Research & Applications 28: 1858–1863. DOI: 10.1002/rra.1546
Muehlbauer, J.D., Duncan, J. M. & Doyle, M.W. (2012) Benign use of salt slugs on aquatic macroinvertebrates: Measuring discharge with salt during an aquatic ecology study. River Research & Applications 28: 1858–1863. DOI: 10.1002/rra.1546
2011
Muehlbauer, J.D., Doyle, M.W. & Bernhardt, E.S. (2011) Macroinvertebrate community responses to a dewatering disturbance gradient in a restored stream. Hydrology and Earth System Sciences 15: 1771–1783. DOI: 10.5194/hess-15-1771-2011
2010
Fuller, R.L., Griego, C., Muehlbauer, J.D., Dennison, J. & Doyle M.W. (2010) Response of stream macroinvertebrates in flow refugia and high-scour areas to a series of floods: A reciprocal replacement study. Journal of the North American Benthological Society (now Freshwater Science) 29: 750–760. DOI: 10.1899/09-107.1
2009
Muehlbauer J.D., LeRoy C.J., Lovett J.M., Flaccus K.K., Vlieg J.K. & Marks J.C. (2009) Short-term responses of decomposers to flow restoration in Fossil Creek, Arizona, USA. Hydrobiologia 618: 35–45. DOI: 10.1007/s10750-008-9545-3
2007
Joseph, J.W., Odegaard, M.L., Ronnebaum, S.M., Burgess, S.C., Muehlbauer, J., Sherry, A.D. & Newgard, C.B. (2007) Normal flux through ATP-citrate lyase or fatty acid synthase is not required for glucose-stimulated insulin secretion. Journal of Biological Chemistry 282: 31592–31600. DOI: 10.1074/jbc.M706080200
Banner Photo Credit: Monica Gosselin-Boeman.
